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Merging anatomical regions

Preparation

1. Download the program for extract annotation table to LUT file.

GWFSAnnotToLUT

2. Extract the annotation file and save it as editable format.

  WFSAnnotToLUT annot_file_path output_file_path

For example,

  GWFSAnnotToLUT /iPsych/freesurfer/subjects/001/label/lh.aparc.annot  /iPsych/freesurfer/subjects/001/label/lh.annot.txt

*replace the subject directory and subject numberings.

Create new lookup table

1. Follow the guides below.