{"id":4380,"date":"2022-11-11T03:39:26","date_gmt":"2022-11-11T03:39:26","guid":{"rendered":"http:\/\/www.ipsych.me\/?p=4380"},"modified":"2022-11-11T03:44:54","modified_gmt":"2022-11-11T03:44:54","slug":"resolve-bedpostx-issue","status":"publish","type":"post","link":"https:\/\/www.ipsych.me\/?p=4380","title":{"rendered":"Resolve Bedpostx issue"},"content":{"rendered":"\n<p>If one previously established SGE engine environment for some other job, bedpostx_gpu will display error and stop. <\/p>\n\n\n\n<pre class=\"wp-block-code\"><code>exit: 412: Illegal number: -1\nYou will get an email at the end of the post-processing stage.<\/code><\/pre>\n\n\n\n<p>Of course the mail will never arrive. <\/p>\n\n\n\n<p>Simple resolution. The error is due to inappropriate FSLPARALLEL setting.<\/p>\n\n\n\n<pre class=\"wp-block-code\"><code>unset SGE_ROOT\nunset FSLPARALLEL<\/code><\/pre>\n\n\n\n<p>Than run bedpostx_gpu.<\/p>\n\n\n\n<p>Again and always, thanks so much, Moises.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>If one previously established SGE engine environment for some other job, bedpostx_gpu will display error and stop. Of course the mail will never arrive. Simple resolution. The error is due to inappropriate FSLPARALLEL setting. Than run bedpostx_gpu. Again and always, thanks so much, Moises.<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[26,1],"tags":[65,63,64,67,66],"class_list":["post-4380","post","type-post","status-publish","format-standard","hentry","category-freesurfer","category-uncategorized","tag-bedpostx","tag-freesurfer","tag-gpu","tag-sge","tag-ubuntu"],"_links":{"self":[{"href":"https:\/\/www.ipsych.me\/index.php?rest_route=\/wp\/v2\/posts\/4380","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ipsych.me\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ipsych.me\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ipsych.me\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ipsych.me\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=4380"}],"version-history":[{"count":3,"href":"https:\/\/www.ipsych.me\/index.php?rest_route=\/wp\/v2\/posts\/4380\/revisions"}],"predecessor-version":[{"id":4385,"href":"https:\/\/www.ipsych.me\/index.php?rest_route=\/wp\/v2\/posts\/4380\/revisions\/4385"}],"wp:attachment":[{"href":"https:\/\/www.ipsych.me\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=4380"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ipsych.me\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=4380"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ipsych.me\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=4380"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}